Tag

Bioinformatics

Computational biology tools where correctness and performance matter. inferCNAsc uses a Rust core for copy number variation and ascertainment bias inference, exposed to the single-cell genomics ecosystem via PyO3.

Engineering

Mermin
k-atic alignment analysis of fluorescence microscopy. Minkowski tensor shape descriptors, multiscale structure tensor fields, topological defect detection via cartan-geo SO(3) holonomy, persistent homology, spatial statistics, and Landau-de Gennes parameter fitting. Outputs calibrated parameters for forward simulation in volterra. 7 crates on crates.io, Python bindings on PyPI.
inferCNAsc
Copy number variation and ascertainment bias inference for single-cell genomics. Rust compute core with Python bindings via PyO3/maturin. Published on PyPI.